PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 674aa    MW: 76703.7 Da    PI: 6.5938
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003868.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.89.7e-1183006712374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA+av+s d++ a++lL+++++++sp+gd+++Rl +yf+ +L+arla++ + ly+ l + +t+   ++e l+a++++++ +P+  + h++ N
  Pbr003868.1 300 TNLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLSHYFADGLEARLAGTRTPLYSPLLSIQTP---VAEILKAYQMYVKYCPFKHMLHFLSN 394
                  789************************************************************999999...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  ++I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpp++R+T+++ p++g   +e++eetg+rL+k+A++++v+fe++v +a+++e+++le+L+
  Pbr003868.1 395 RTIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPNIRLTAIELPQPGflPTERVEETGRRLKKYAARFNVQFEYKV-IAQKWETIQLEDLK 491
                  **********************************************************************************9.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++   + ++ns+ F++rf eal+++sa+fd++ea++pre+e+r + E+++ g++
  Pbr003868.1 492 IDRNELTVVNCMHRLKHIPDETVVVTSPRDIVLKLIRKINPDLFIHGVVNGSYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRLMFEKAVYGKD 589
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+nvvaceg er+er et+++W+ r ++aGFk+vpl+++  k +k +l+ ++  d + ++e+ +++++gWk+r ++ + +W+
  Pbr003868.1 590 IMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMDyHDDFLIDEDGEWMLQGWKGRIIFGLAFWK 671
                  ***************************************************99999*************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.546273650IPR005202Transcription factor GRAS
PfamPF035143.4E-115300671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MKNFQFLSTQ NLVNGFQVNH EPTNPLFLPT TTDHPTDSGL SSSGSDGDCF DISDSRPVLK  60
YISDILLEED LEDKPCMLQN CLALHAAEKS FYDVLNAKDP PSPDQPPLQV YHSFEHSDDD  120
SSQSCHSSND SRSARTDSVF DSSETLLASD SISGNFGGVG EARTLIPNGR YGIIDVERYQ  180
SVPPGGNTLR RNFAPEPEND GYISANRLKG KKNRQREDGD YADEGRSSKQ SAALGDDAEP  240
QEMFDRVLLC HVNHTHESCI RDKPLGSEVC EKLQPTKQSK GSKTTRSKKQ NNNREVVDLT  300
NLLTQCAQAV ASYDQRTASE LLKQIRKHSS PYGDATERLS HYFADGLEAR LAGTRTPLYS  360
PLLSIQTPVA EILKAYQMYV KYCPFKHMLH FLSNRTIIKL AEKATRLHIV DFGISYGFQW  420
PCLIQRLSER NGGPPNIRLT AIELPQPGFL PTERVEETGR RLKKYAARFN VQFEYKVIAQ  480
KWETIQLEDL KIDRNELTVV NCMHRLKHIP DETVVVTSPR DIVLKLIRKI NPDLFIHGVV  540
NGSYNSPFFV TRFKEALYHF SAMFDMFEAT IPREDEQRLM FEKAVYGKDI MNVVACEGLE  600
RVERPETYKQ WQVRYHRAGF KQVPLDQELL KRVKIMLKAM DYHDDFLIDE DGEWMLQGWK  660
GRIIFGLAFW KPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-453036718375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364372.10.0PREDICTED: scarecrow-like protein 14
TrEMBLD9ZJB90.0D9ZJB9_MALDO; SCL domain class transcription factor
STRINGPOPTR_0001s24890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-179SCARECROW-like 14